Yeah, one can't control what a cheater does with a file manager or the console, I guess.
Yes, and there's a very good reason for that.
Once one downloads a module from the internet that some other one has posted there to be downloaded, or buys a copy of the original game, that copy of the module or game becomes the property of the one who downloaded it and they can do what they want with it. Which is precisely what the ones who created the game, including the Aurora Tool set, intended.
It is impossible, by the definition of the word "cheater", for someone to cheat themselves. When one is playing a single player game, there is no one else for one to cheat. The reason the ones who created the game included the tool set and the capability to use the console commands is so each individual who plays the game may modify it to suit their own pleasure. After all, the purpose of playing games is to have fun. Not everyone agrees on what that entails.
For those who enjoy "controlling" how other individuals play this particular game, that is what PW's and private DM run multi player sessions are for.